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12 Best Medical Coding Software Shortlist

After rigorous evaluation, I've compiled a shortlist to quickly summarize the very best medical coding software solutions:

  1. Codify by AAPC - Best for comprehensive code search and updates
  2. eMDs - Best for integrating practice management and patient care
  3. SpeedeCoder - Best for fast and accurate code lookup
  4. Find-A-Code - Best for access to a wide range of coding resources
  5. TruCode - Best for encoder integration in healthcare systems
  6. Optum EncoderPro - Best for robust coding and compliance tools
  7. Cerner Millenium - Best for interoperability across the healthcare continuum
  8. Practice Perfect - Best for allied health professionals seeking a comprehensive management
  9. athenaOne - Best for end-to-end patient encounter management
  10. Accuro EMR - Best for flexible, customizable medical practice management
  11. Kareo - Best for independent practices seeking simplified billing
  12. AdvancedMD - Best for automation and efficiency in large-scale practices

Navigating the complex world of medical billing requires a robust, HIPAA-compliant solution that streamlines the process, from claim submission to insurance companies to final remittance. These tools often include front office modules for patient data handling, claims scrubbing tools for error-free claim submission, an in-house clearinghouse for claims management, and even templates to standardize your medical billing process.

The benefits are numerous: you'll see an improvement in cash flow as claims are processed faster and more accurately, reducing rejections from insurance companies.

If you've ever grappled with the constant back-and-forth of claim submission, experienced delayed payments, or had difficulty keeping track of the billing for both inpatient and outpatient services, these tools address those pain points. Add to that the perks of e-prescribing, the convenience of a mobile app for on-the-go access, and even credit card processing for patient co-pays.

Below, you can dive deeper into these selections. I believe they could be just what you need to streamline your medical billing and improve your practice's efficiency.

What Is Medical Coding Software?

Medical coding software is a critical tool used primarily by healthcare providers, medical billing companies, and coders. This advanced technology simplifies the complex process of translating patient records into standardized codes for billing and record-keeping purposes.

These codes correspond to the diagnoses, procedures, and treatments provided, effectively communicating crucial information for insurance eligibility, insurance claims processing, regulatory compliance, and data profitability analysis. By eliminating manual coding and the potential for human error, medical coding software boosts efficiency, enhances accuracy, and contributes significantly to the smooth operation of healthcare practices.

12 Best Medical Coding Software Overview

1. Codify by AAPC - Best for comprehensive code search and updates

Codify's dashboard preview for code crosswalks
Codify's dashboard preview for code crosswalks

Codify by AAPC is a powerful tool that provides an expansive library of medical codes, regularly updated to keep pace with changes in the healthcare industry. It excels in delivering comprehensive code search capabilities, ensuring your practice remains up-to-date and efficient.

Why I Picked Codify by AAPC:

I selected Codify by AAPC for its impressive scope and constant commitment to updates. Among the many software options I examined, Codify stood out for its robust search features, allowing for in-depth access to a vast array of medical codes. It’s the perfect tool when a comprehensive and continuously updated code search is the priority.

Standout features & integrations:

Codify offers advanced features such as the ability to access and search across multiple code sets, extensive note-taking and bookmarking capabilities, and a feature that suggests modifiers when needed. Their medical coding bundle integrates seamlessly with Codify's EncoderPro, enabling a smooth transition from medical code lookup to applying those codes within your existing system.


From $99/user/month (billed annually)

  • Comprehensive access to all coding books
  • Yearly updates included
  • Additional access to the EncoderPro platform for an added fee


  • Extensive search capabilities across a vast library of codes
  • Regular updates ensure you stay current with changes in medical codes
  • Helpful features such as code-specific notes and bookmarks


  • The pricing may be high for smaller practices
  • The interface might be overwhelming for beginners due to the range of features
  • The full benefit of the software requires an additional investment for integration with EncoderPro

2. eMDs - Best for integrating practice management and patient care

eMDs dashboard view for patient tracking
Take a look at eMDs' dashboard view for patient tracking

eMDs offer a robust system for not just medical coding but the overall management of medical practices. This system excels at integrating practice management with patient care, ensuring efficiency and cohesion across all operations.

Why I Picked eMDs:

eMDs made it onto my list because of its comprehensive approach. In my judgment, eMDs stands out for its ability to meld practice management with patient care seamlessly, which few other software solutions can do effectively. I chose it as best for integrating practice management and patient care due to its dual focus on administrative tasks and actual medical service provision.

Standout features & integrations:

The system allows for efficient scheduling, documentation, billing, and reporting - all vital components of effective practice management. It also facilitates patient engagement with features like a patient portal, telehealth services, and prescription management. Notably, eMDs integrate smoothly with various EHRs and third-party payers applications for laboratory, imaging, pharmacy, and other services, creating a cohesive ecosystem for your practice.


From $500/user/month (billed annually)

  • Access to all integrated features
  • No additional charges for major updates or support


  • Comprehensive solution covering both practice management and patient care
  • Smooth integration with EHR software and third-party applications
  • Includes patient engagement tools such as a patient portal and telehealth services


  • The high price point might be a barrier for smaller practices
  • The wide range of features could result in a steep learning curve
  • Some users may find the interface less intuitive compared to other solutions

3. SpeedeCoder - Best for fast and accurate code lookup

SpeedeCoder software view on all devices
SpeedeCoder software view on all devices

SpeedeCoder is a dedicated medical coding software that emphasizes speed and accuracy in code lookup. It's designed to optimize your coding process, making it the ideal choice for those who value rapid, precise results in their coding activities.

Why I Picked SpeedeCoder:

I picked SpeedeCoder for its strong commitment to swift, accurate code lookups. It stood out in my comparisons, particularly for its user-friendly interface that allows even novice users to find the right codes quickly and accurately. SpeedeCoder rightly earns its place as the best for fast and accurate code lookup because of these features.

Standout features & integrations:

SpeedeCoder provides intuitive search features with autocomplete functionality and an extensive database of updated codes. It also offers quick access to frequently used codes, enhancing the overall efficiency of the coding process. This software integrates well with most electronic health records (EHR) and billing systems, promoting better workflow continuity.


From $20/user/month

  • Access to an extensive database of updated medical codes
  • Unlimited lookups within the subscription period


  • Fast and accurate code lookup process
  • User-friendly interface accessible for beginners
  • Efficient integration with EHR and billing systems


  • Lacks some of the more complex features found in comprehensive practice management systems
  • Requires internet connection for use, limiting its accessibility in low-connection areas
  • Pricing can add up for larger teams, despite its relatively affordable starting cost

4. Find-A-Code - Best for access to a wide range of coding resources

Find-A-Code website homepage
Find-A-Code offers a broad spectrum of coding resources.

Find-A-Code is an all-encompassing medical coding software, offering a broad spectrum of coding resources. It integrates codes, coding tools, and comprehensive educational materials, making it an excellent choice for those seeking diverse coding resources.

Why I Picked Find-A-Code:

I chose Find-A-Code for its robust library of resources. Its comprehensive collection of coding tools and educational materials stood out to me, offering more than just codes. With its commitment to being an all-in-one solution, Find-A-Code is indeed best for access to a wide range of coding resources.

Standout features & integrations:

Find-A-Code offers more than just an extensive library of codes. It features built-in tools such as calculators, charts, and coding guides. It also includes educational resources to help users stay up-to-date with the ever-evolving world of medical coding. This software integrates seamlessly with most EHR systems, offering a smooth flow of information.


From $20/user/month

  • Access to comprehensive coding resources
  • Included use of built-in coding tools


  • Broad spectrum of coding resources
  • Educational materials available for continuous learning
  • Good integration with most EHR systems


  • Might seem overwhelming for beginners due to its extensive features
  • Requires regular updates to keep up with changes in codes
  • Higher cost compared to some simpler coding tools

5. TruCode - Best for encoder integration in healthcare systems

TruCode website homepage view
TruCode website homepage view

TruCode serves as a proficient medical coding software that emphasizes encoder integration within healthcare systems. It excels in providing accurate, immediate, and intuitive coding help right within the workflow, making it ideal for healthcare system integration.

Why I Picked TruCode:

TruCode caught my attention due to its exceptional integration capabilities. It stands apart with its advanced encoding functionality designed to fit right into healthcare systems without disrupting existing workflows. Hence, I firmly believe that TruCode is the best pick for those who prioritize encoder integration in healthcare systems.

Standout features & integrations:

TruCode offers real-time coding assistance, providing coding professionals with the tools they need to make precise coding decisions on the spot. Its integration is so seamless that users can access its comprehensive library of codes without leaving their healthcare systems. It integrates well with EHRs, billing systems, and other health IT platforms for a seamless workflow.


Pricing upon request


  • Excellent encoder integration with healthcare systems
  • Real-time, intuitive coding assistance
  • Smooth interoperability with various health IT platforms


  • Pricing information not readily available
  • Could be overkill for smaller practices
  • May require training to fully utilize features

6. Optum EncoderPro - Best for robust coding and compliance tools

Optum EncoderPro's view of its content module
A look at Optum EncoderPro's view of its content module

Optum EncoderPro is a web-based coding and compliance solution providing a wide array of tools. This software helps users achieve more accurate billing, improved workflow, and compliance with the latest regulations, thereby, making it perfect for those seeking robust coding and compliance tools.

Why I Picked Optum EncoderPro:

I chose Optum EncoderPro because it offers a comprehensive suite of robust tools that cover coding and compliance exceptionally. What makes it unique is the extensive coverage of its features, extending beyond just medical coding. Thus, I believe it's the best choice for users needing powerful tools for both coding and compliance.

Standout features & integrations:

Optum EncoderPro's features include an extensive coding library, integrated compliance rules, and workflow-enhancing tools. The software provides users with a comprehensive set of CPT, HCPCS, and ICD-10 codes. It also integrates well with electronic health record systems, offering users a streamlined experience and improving workflow efficiency.


Pricing upon request


  • Extensive coding library
  • Robust compliance tools
  • Seamless integration with EHR systems


  • Pricing not readily accessible
  • Learning curve for new users
  • Its vast range of features might be overwhelming for some users

7. Cerner Millennium - Best for interoperability across the healthcare continuum

Cerner Millennium website homepage view
Cerner Millennium hosts an array of features designed to support your healthcare services.

Cerner Millennium is a comprehensive suite of healthcare solutions designed to support the broad scope of healthcare services. Its features facilitate coordinated care and fluid data exchange, earning its reputation as the best for interoperability across the healthcare continuum.

Why I Picked Cerner Millennium:

In selecting tools, Cerner Millennium stood out because of its commitment to providing interconnected healthcare services. Its system stands out in its ability to integrate disparate health systems, making it best suited for healthcare providers seeking a high level of interoperability.

Standout features & integrations:

Cerner Millennium's key features include electronic health records, population health management, and revenue cycle management (RCM) tools. Its interoperability extends to integrations with various healthcare systems, supporting seamless information flow between disparate systems, including labs, pharmacies, and other clinical services.


Pricing upon request


  • Supports a wide range of healthcare services
  • Interoperability with various healthcare systems
  • Comprehensive suite of tools


  • Pricing information is not readily available
  • The system can be complex to navigate for new users
  • Requires a substantial investment in training for effective utilization

8. Practice Perfect - Best for allied health professionals seeking comprehensive management

Practice Perfect website
Practice Perfect website

Practice Perfect is a comprehensive practice management solution explicitly designed for allied health professionals. It combines administrative, clinical, and billing capabilities in one platform, making it ideal for those seeking a holistic management solution.

Why I Picked Practice Perfect:

I selected Practice Perfect for this list due to its all-in-one functionality, which distinguishes it from other platforms. It excels in providing a single solution for allied health professionals who require extensive management tools, reinforcing its position as the best for comprehensive management.

Standout features & integrations:

Practice Perfect offers robust features like scheduling, electronic medical records (EMR), and billing. It integrates with leading payment processing and accounting software, offering a streamlined experience for both practitioners and patients.


Pricing for Practice Perfect starts from $85/user/month (billed annually).


  • Comprehensive suite of management tools
  • Integration with leading payment and accounting software
  • Designed specifically for allied health professionals


  • Steeper learning curve for users new to practice management software
  • The pricing might be higher for smaller practices
  • Annual billing may not be preferred by all users

9. athenaOne - Best for end-to-end patient encounter management

Athena Health Vitals Feature
Athena Health Vitals Feature

athenaOne is a cloud-based healthcare IT suite offering a range of services, including electronic health records (EHR), patient engagement, and revenue cycle management. Its holistic approach to managing patient encounters, from the first point of contact to final billing, makes it an excellent choice for end-to-end management.

Why I Picked athenaOne:

In choosing athenaOne, I was impressed by its comprehensive patient encounter management. Its ability to seamlessly integrate various healthcare services sets it apart. Furthermore, its robustness in managing the entirety of a patient's journey through the healthcare system underscores why I believe it's best for end-to-end patient encounter management.

Standout features & integrations:

Key features of athenaOne include EHR, medical billing service, medical billing system, and patient engagement tools. Crucially, it integrates well with laboratory information systems, imaging systems, and other healthcare tech platforms, thus enhancing data flow across the entire healthcare continuum.


Pricing for athenaOne is upon request, indicating a customized approach based on specific healthcare practice needs.


  • Comprehensive patient encounter management
  • Strong integration with various healthcare systems
  • Cloud-based system ensures easy access and data security


  • Pricing is not transparent, which could be a barrier for some
  • The range of features may be overwhelming for small practices
  • Customization options may require a learning curve for staff

10. Accuro EMR - Best for flexible, customizable medical practice management

Accuro EMR Software user dashboard
Accuro EMR Software user dashboard is simple and easy to use.

Accuro EMR is a cloud-based electronic medical records (EMR) system that offers a flexible platform for health providers to manage and streamline their practice. With its adaptable and modular structure, it is an optimal choice for medical professionals billers seeking customizable practice management.

Why I Picked Accuro EMR:

I picked Accuro EMR due to its highly flexible and customizable structure. This standout feature makes it unique, providing a tailored experience for each healthcare practice. Given these capabilities, it's clear why it aligns perfectly with the unique requirements of customizable medical practice management.

Standout features & integrations:

Accuro EMR shines with features like patient scheduling, prescription management, and an integrated billing system. It also stands out with its compatibility with diagnostic equipment, lab systems, and other healthcare technology, facilitating a more streamlined workflow.


Accuro EMR's pricing structure starts from $200/user/month, which includes full EMR access, secure messaging, and live support.


  • High degree of customizability catering to specific needs of a practice
  • Integrates well with other healthcare systems
  • Comprehensive feature set from scheduling to billing


  • Pricing may be on the higher side for smaller practices
  • The learning curve associated with customizing the platform
  • Limited availability of online resources for troubleshooting or learning

11. Kareo - Best for independent practices seeking simplified billing

Kareo's dashboard view
Kareo's is designed primarily for independent practices.

Kareo is a cloud-based healthcare IT platform designed primarily for independent practices. Its holistic approach, including practice management, electronic health records (EHR), and billing services, makes it a robust solution for healthcare providers. With a simplified billing system, it caters especially well to independent practices that wish to streamline this often complex process.

Why I Picked Kareo:

I selected Kareo because of its focus on catering to independent practices with simplified billing. This focus stood out, demonstrating a commitment to supporting practices that often lack large administrative departments. I consider it the best for this particular use case because of how effectively it simplifies and demystifies the billing process.

Standout features & integrations:

Key features of Kareo include its user-friendly EHR, efficient practice management system, and notably, its simplified billing process. Furthermore, it integrates well with numerous other systems, including laboratories and hospitals, which enhances its overall effectiveness in managing a practice.


Kareo's pricing starts from $160/user/month (billed annually). This includes features such as patient records, scheduling, and billing, among others.


  • User-friendly interface, simplifying various processes
  • Focus on independent practices with a simplified billing approach
  • Robust integration with other healthcare systems


  • The annual billing plan might not be suitable for all practices
  • Certain advanced features may require additional costs
  • Some users have reported a need for better customer support services.

12. AdvancedMD - Best for automation and efficiency in large-scale practices

AdvancedMD's dashboard and navigation view
A sneak peek at AdvancedMD's dashboard and navigation view

AdvancedMD is a cloud-based electronic health record (EHR) and practice management solution designed primarily for medical practices of various sizes. With its robust automation features, it helps large-scale practices streamline their operations and improve overall efficiency.

Why I Picked AdvancedMD:

I picked AdvancedMD for this list because of its impressive automation capabilities. These features make it stand out from other EHR and practice management tools. I determined that it's the best for large-scale practices because its automation and efficiency enhancements can have a significant positive impact on the complex operations that larger practices typically handle.

Standout features & integrations:

Notable features of AdvancedMD include its automated scheduling, task management, and billing processes, all designed to enhance efficiency. Additionally, its compatibility and integration capabilities with numerous health and medical apps expand its usability and effectiveness.


Pricing for AdvancedMD begins at $729/user/month (billed annually). Please note this price includes a suite of practice management, EHR, and telemedicine services.


  • Robust automation capabilities enhance operational efficiency
  • Scalability makes it suitable for large-scale practices
  • Impressive integration with numerous health and medical apps


  • High starting price may be prohibitive for some practices
  • Its broad scope of features may involve a learning curve
  • Some users have reported occasional system glitches that need troubleshooting.

Other Healthcare Medical Coding Software

Below is a list of additional medical coding software we shortlisted but did not make it to the top 12. Definitely worth checking them out.

  1. NextGen Healthcare - Good for integrated electronic health record and practice management billing solution
  2. Epic Systems - Good for comprehensive healthcare IT suite in large hospital systems
  3. Waystar - Good for advanced predictive analytics for revenue cycle management
  4. McKesson Revenue Cycle Management - Good for large-scale healthcare financial management
  5. Medicode - Good for precise medical coding and billing
  6. 3M Codefinder - Good for accurate clinical coding and compliance tracking

Selection Criteria for Medical Coding Software

Choosing the right medical practice management software is a critical decision that can impact the efficiency of your practice and the satisfaction of your patients. I've evaluated dozens of these tools, keeping a keen eye for specific features and functionalities that are vital for efficient medical practice.

Core Functionality:

  • Appointment scheduling: Ability to manage and organize patient appointments efficiently.
  • Billing and invoicing: A system that automates the billing process, keeps track of payments, and handles insurance claims reimbursement.
  • Electronic medical records (EMR): Secure digital versions of paper charts to accurately track patient history over time.
  • Prescription management: Assist healthcare providers in creating and managing prescriptions.

Key Features:

  • Integration capabilities: The ability to integrate with other systems such as labs, hospitals, pharmacies, and other medical service providers.
  • Security and compliance: High level of data security to protect patient information and comply with regulations such as HIPAA.
  • Reporting and analytics: Providing valuable insights into the practice's performance, patient demographics, revenue, etc.
  • Patient Portal: An interface for patients to access their medical records, schedule appointments, and communicate with healthcare providers.


  • Intuitive interface: For this type of software, a user-friendly dashboard that provides quick access to various functionalities is crucial. The system should allow for easy navigation between scheduling, patient records, billing, and other key areas.
  • Training and support: Given the complexity and critical nature of these systems, the vendor should provide comprehensive training materials and responsive customer support.
  • Customizability: The software should allow for customization to suit the specific workflows and processes of practice.
  • Mobile access: Given the busy nature of healthcare professionals, a tool that provides mobile access is crucial for managing tasks on-the-go.

People Also Ask

What are the benefits of using medical coding software?

Medical coding software comes with numerous advantages such as:

  • Improved Accuracy: They reduce human errors by automating the coding process.
  • Enhanced Efficiency: Software can process codes much quicker than humans, saving valuable time.
  • Up-to-date Information: They are frequently updated with new coding rules and regulations.
  • Streamlined Workflow: By automating repetitive tasks, the software can streamline the coding and billing processes.
  • Financial Savings: By minimizing errors and denials, the software can help healthcare practices save money.

How much do medical coding software tools typically cost?

The cost of medical coding software varies widely depending on the features, the size of the practice, and the vendor. Some vendors may charge a one-time licensing fee, while others use a subscription model where you pay a monthly or yearly fee.

What are the pricing models for medical coding software?

There are primarily two pricing models for medical coding software:

  • Subscription: You pay a recurring fee, usually monthly or annually.
  • Perpetual License: You pay a one-time fee upfront and own the software for life.

What is the typical range of pricing for medical coding software?

Pricing for medical coding software can range from $59/user/month for smaller practices to $500/user/month or more for larger practices or hospitals that require more complex systems.

What are the cheapest and most expensive medical coding software?

The most affordable medical coding software options usually start around $59/user/month, such as Kareo. On the other end of the spectrum, advanced systems like Epic Systems can cost upwards of $500/user/month or more, depending on the complexity and scale of the practice.

Are there any free medical coding software options?

While there are very few completely free medical coding software options, some vendors do offer free trials or free versions with limited functionality. It's always advisable to explore these trials before committing to specific software.

Other Healthcare Medical Coding Software Reviews


This article has taken a comprehensive look at various medical coding software options, providing insights into their strengths, unique selling propositions, pricing, and potential drawbacks. Each tool offers a unique mix of features and capabilities, and your choice should be guided by the specific needs and budget of your medical practice.

Key takeaways:

  1. Prioritize Core Functionality: Always consider the specific needs of your medical practice. The best software is the one that delivers the core functionality you need, be it code validation, scrubbing, or medical terminology databases. Tools with unnecessary features may only add to complexity and cost.
  2. Consider Usability and Support: Choose software that offers an intuitive interface and robust customer support. Complex systems can lead to errors and reduced efficiency if they're hard to navigate. Also, reliable customer support can be a lifesaver when issues arise or when you need help understanding a feature.
  3. Evaluate Pricing and Scalability: Cost is a major consideration, but don't let it overshadow the importance of scalability. The best software for your practice should not only fit within your budget but also be able to accommodate your needs as your practice grows. Remember, switching systems later can be costly and time-consuming.

What do you think?

I hope this guide has been helpful in your search for the right medical coding software. But I understand that this is a vast market with many tools. So, if there's a tool you love and it's not on my list, I invite you to share it with me.

I always want to learn about new tools and solutions that could benefit my readers. Your experience and insights are valuable to me. Please feel free to share!

John Payne
By John Payne

John Payne is the co-founder and company director of Symphony Health. With over 20 years of management experience John is working alongside his wife, Dr. Kate Payne to build a multi-site Medical Practice where staff work collaboratively for the good of their patients. John is passionate about improving access to quality Healthcare in North Vancouver and sharing best practice with other people managing medical practices.