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12 Best Substance Abuse EMR Software

I've handpicked these top-notch substance abuse EMR software, and summarized what each does best:

  1. ClinicTracker - Best for comprehensive care management
  2. Qualifacts Systems - Best for integrated treatment approaches
  3. TheraNest - Best for streamlined practice management
  4. RXNT - Best for robust mental and behavioral health functionality
  5. Azzly - Best for user-friendly and intuitive interface
  6. AdvancedMD - Best for specialized addiction medicine support
  7. athenaOne - Best for unified healthcare solutions
  8. InSync Healthcare Solutions - Best for integrated substance abuse specific features
  9. Power Diary - Best for appointment management and scheduling
  10. Valant - Best for a seamless blend of practice management and EHR
  11. BestNotes - Best for superior interoperability and coordination of care
  12. PatientVu - Best for addiction specific patient monitoring

In my journey through medical technology, I've seen the impact that the right EMR system can have on substance abuse treatment.

Substance abuse EMR software streamlines the integration and management of crucial patient information and treatment plans, specifically tailored for addiction treatment scenarios. It helps you unify numerous facets of your practice, from scheduling to clinical documentation, enhancing efficiency, and improving patient outcomes.

So, let's explore these options together to see which one is the right fit for your practice.

What is Substance Abuse EMR Software?

Substance abuse EMR software is a specialized electronic health record (EHR) system that aids professionals in the addiction treatment sector. It streamlines the management of patient records, treatment planning, billing, and scheduling, amongst other tasks, all within a singular system. This type of software caters specifically to the needs of therapists, counselors, psychologists, psychiatrists, and any health professional dedicated to treating substance abuse.

Its goal is to enhance the quality and efficiency of treatment, and it does so by incorporating features like detailed patient history records, integrated treatment planning, e-prescribing, appointment scheduling, and regulatory compliance assistance. The use of such software plays a pivotal role in managing the complex, often multi-faceted aspects of substance abuse treatment, thereby aiding professionals in providing optimal patient care.

Overviews of the 12 Best Substance Abuse EMRs Software

1. ClinicTracker - Best for comprehensive care management

Screenshot for the main interface of ClinicTracker substance abuse EMR software
Here is how the provider portal interface of ClinicTracker is looking like.

ClinicTracker provides a robust EMR solution aimed at simplifying complex processes in substance abuse treatment. This software has been designed to offer comprehensive care management, integrating various aspects of patient care into a unified platform.

Why I Picked ClinicTracker:

When I was deciding on the best EMR software, ClinicTracker caught my eye with its comprehensive approach. It uniquely combines a range of functionalities, including patient record tracking, appointment scheduling, and clinical documentation. I felt that this integrated model truly stands out, addressing the multifaceted needs of substance abuse care. That's why I believe it's best for comprehensive care management.

Standout Features & Integrations:

ClinicTracker's standout features include customizable workflows, extensive reporting capabilities, and patient engagement tools like a dedicated patient portal. These features empower better patient communication, more efficient workflows, and ultimately improved patient care. When it comes to integrations, ClinicTracker shines by supporting HL7 interfacing, which facilitates patient data exchange with labs and hospitals. It also integrates with various billing and e-prescribing platforms, amplifying its holistic approach to healthcare.


The pricing for ClinicTracker starts at $60/user/month (billed annually). This includes basic implementation, training, and support.


  • Customizable workflows that can be adjusted to your practice's needs
  • Robust integration with other healthcare systems
  • Extensive feature set, specifically designed for substance abuse care


  • The software can be overwhelming to learn due to its wide range of features
  • The cost may be prohibitive for smaller practices or individual practitioners
  • User interface could use some modern updates

2. Qualifacts Systems - Best for integrated treatment approaches

A screenshot of Qualifacts Systems' dashboard
Here is a screenshot of Qualifacts Systems' dashboard.

Qualifacts Systems offers an all-encompassing EHR solution for substance abuse treatment centers. Its design and functionality, specifically crafted for an integrated treatment approach, distinguish it from other software.

Why I Picked Qualifacts Systems:

After much comparison, I chose Qualifacts Systems for its focus on an integrated treatment approach. It differentiates itself by offering tailored workflows and features that facilitate integrated care models, enhancing both clinical and operational efficiencies. This standout aspect led me to conclude that it's the best for integrated treatment approaches.

Standout Features & Integrations:

Among its key features, Qualifacts Systems offers detailed case management, a patient portal, customizable treatment plans, and advanced reporting tools. The software's eligibility to combine these features in a user-friendly interface is impressive. As for integrations, Qualifacts Systems offers connectivity with leading labs, pharmacies, and health information exchanges, thus ensuring streamlined information flow.


Pricing information for Qualifacts Systems is not readily available on their website and can be obtained upon request.


  • Designed for integrated treatment approaches
  • Offers customizable treatment plans
  • Ideal integrations with labs, pharmacies, and health information exchanges


  • Pricing information isn't transparently available
  • Might require time to get accustomed to the vast number of features
  • The user interface could be more intuitive

3. TheraNest - Best for streamlined practice management

The main interface of TheraNest EMR
This is what the interface of TheraNest EMR looks like. Take a look into the charts, as well as the service type information which is shown on the photo.

TheraNest provides an all-in-one integrated solution for substance abuse treatment clinics, focusing on streamlined practice management. This EMR system is meticulously designed to simplify and improve the administrative aspects of a substance abuse treatment center.

Why I Picked TheraNest:

I chose TheraNest because it deftly integrates multiple aspects of practice management into a single platform, which is a breath of fresh air in the often fragmented world of EMR systems. With robust features including appointment scheduling, billing, and a client portal, TheraNest truly stands out. This comprehensive nature is why I peg it as the best for streamlined practice management.

Standout Features & Integrations:

TheraNest boasts comprehensive features including appointment reminders, billing, a client portal, progress notes, treatment plans, and detailed reports. In terms of integrations, it offers absolute connectivity with Wiley Practice Planners for treatment planning and integrates well with popular business tools like Google Calendar and Microsoft Office.


Pricing for TheraNest starts from $38/user/month, making it a viable choice for small to midsize practices.


  • All-in-one solution for practice management
  • Integrates well with popular business tools
  • Offers a free trial to test out the platform


  • May be more expensive compared to other options
  • Lack of customization options
  • UI might feel a bit outdated

4. RXNT - Best for robust mental and behavioral health functionality

A screenshot of the RXNT substance abuse EMR software interface
Here's a screenshot of the RXNT prescriptions tab. On this tab, the list of prescriptions established by the provider will be available to check.

RXNT provides an electronic health record (EHR) system that's designed with a strong emphasis on mental and behavioral health functionality. RXNT is cloud-based, ONC-certified medical software. It includes a comprehensive set of features and tools that cater specifically to the unique needs of mental and behavioral health providers.

Why I Picked RXNT:

I selected RXNT for its unique focus on mental and behavioral health functions within its EHR software. It sets itself apart by prioritizing the specific needs of this sector, with specialized tools like customizable behavioral health templates and integrated patient assessment tools. This distinct emphasis makes RXNT the best choice for robust mental and behavioral health functionality.

Standout Features & Integrations:

RXNT’s feature suite is robust, with capabilities like patient reminders, telehealth support, customizable mental health templates, e-prescribing, and client portal access. It offers integrations with popular software platforms, including QuickBooks for accounting and various laboratory management systems for smooth data transition.


The pricing for RXNT starts at $65/user/month, representing a solid investment for a comprehensive, mental health-focused EHR system.


  • Tailored to the specific needs of mental and behavioral health providers
  • Robust feature suite including telehealth and customizable templates
  • Reliable integration with popular software platforms


  • No free version is available, only a free demo
  • Might be expensive for smaller practices
  • The interface may take some time to navigate effectively

5. Azzly - Best for user-friendly and intuitive interface

example photo for Azzly's dashboard
This is how the Azzly dashboard looks like. From here, important patient information will be available to view.

Azzly provides a specialized electronic health record (EHR) and revenue cycle management (RCM) system designed for ease of use. It offers a streamlined and intuitive user interface which makes it easy for users to manage the complexities of healthcare management.

Why I Picked Azzly:

I chose Azzly for its exceptionally user-friendly interface. In the complex world of EHR and RCM systems, ease of use can make a significant difference. Azzly stands out for its intuitive design that simplifies navigation, making it an ideal choice for those seeking a user-friendly interface in their healthcare management tools.

Standout Features & Integrations:

Azzly includes a range of useful features such as appointment scheduling, treatment planning, and billing and claims management. Its integrations are particularly noteworthy, as Azzly connects consistently with labs, pharmacies, and health information exchanges to ensure smooth operation.


Azzly's pricing begins from $180/user/month, reflecting the comprehensive nature of its feature suite and user-friendly interface. This price point might be a higher starting price than other EHR and RCM systems, but its intuitive design may warrant the investment for some organizations.


  • Exceptionally user-friendly and intuitive interface
  • Comprehensive feature set including appointment scheduling and treatment planning
  • Smooth integrations with labs, pharmacies, and health information exchanges


  • No free version available, only a free demo
  • Higher starting price than some other systems
  • Limited customization options compared to some competitors

6. AdvancedMD - Best for specialized addiction medicine support

dashboard tab of AdvancedMD
Take a look into the dashboard of AdvancedMD, where you can view the patient list and information, as well as designated tabs for notes, messages, orders and such.

AdvancedMD is a cloud-based EHR (Electronic Health Records) and Practice Management (PM) solution that caters to medical practices of all sizes. It offers robust capabilities that specifically support addiction medicine, providing comprehensive tools to help track and manage patient recovery.

Why I Picked AdvancedMD:

I selected AdvancedMD because of its dedicated functionalities for addiction medicine. Not every EHR and PM system caters to this specific need, making AdvancedMD unique in its focus. Given the unique requirements and challenges associated with addiction medicine, I believe AdvancedMD is best suited for this specialized area.

Standout Features & Integrations:

AdvancedMD shines with its features like electronic prescribing, customizable templates for addiction medicine, and comprehensive reporting tools. It integrates well with a variety of other healthcare systems and databases, which can help improve patient management and clinical decision-making.


Pricing for AdvancedMD starts at $729/user/month. This pricing takes into account the specialized functionality and comprehensive feature set offered by the platform, particularly for addiction medicine.


  • Specialized features for addiction medicine
  • Comprehensive reporting tools
  • Strong integrations with other healthcare systems


  • Higher starting price than some other platforms
  • No free tier, only a free demo
  • The user interface could be more intuitive

7. athenaOne - Best for unified healthcare solutions

main profile information page of athenaOne
This is how an athenaOne profile looks like. From personal information and medically related information, you can check it on this page of athenaOne.

athenaOne is a unified, cloud-based suite of healthcare services, designed to manage all aspects of a medical practice. It simplifies the integration of electronic health records (EHR), revenue cycle management, patient engagement, and care coordination, hence it's best for providing a holistic solution to healthcare management.

Why I Picked athenaOne:

I picked athenaOne because it integrates various health management solutions into one platform, reducing the need for multiple disparate systems. What sets athenaOne apart is its comprehensive approach to healthcare services, which is why I've selected it as the best for unified healthcare solutions.

Standout Features & Integrations:

athenaOne provides a range of powerful features, including EHR, medical billing software, patient portal, appointment scheduling, and more. Its interoperability with various medical equipment and software solutions makes it a convenient choice for healthcare providers seeking to centralize their operations.


Pricing for athenaOne starts from $140/user/month (billed annually). Please note, the price can vary depending on the specific services and functionalities chosen.


  • Integration of multiple healthcare services into one platform
  • Comprehensive range of features
  • Robust interoperability with medical equipment and software solutions


  • No free tier available, only a free demo
  • Pricing could be complex due to the range of services offered
  • Some users may find the platform complex to navigate initially due to its wide range of functionalities.

8. InSync Healthcare Solutions - Best for integrated substance abuse specific features

main page of Insync substance abuse EMR software
Here is a screenshot of Insync's main page where important tabs are prioritized. One important feature is the Messaging Tab, which can be easily viewed on this tab.

InSync Healthcare Solutions is a comprehensive healthcare management tool designed to cater to a variety of medical specialties, including substance abuse treatment. Its built-in substance abuse specific features make it ideal for addiction centers and substance abuse counselors to manage their patient information and treatment plans efficiently.

Why I Picked InSync Healthcare Solutions:

I chose InSync Healthcare Solutions for its specific focus on substance abuse treatments among its many other medical fields of specialty. Its dedicated substance abuse features differentiate it from other healthcare tools, making it my pick for best integrated substance abuse specific features.

Standout Features & Integrations:

InSync Healthcare Solutions offers many essential features such as Electronic Medical Records (EMR), Practice Management, and Revenue Cycle Management. For substance abuse treatment, it offers additional modules like group therapy scheduling and advanced note templates. It also integrates coherently with major laboratories for quick and easy lab results.


InSync Healthcare Solutions' pricing starts at $100/user/month (billed annually). This price can vary based on the specific modules and features required.


  • Offers substance abuse specific features
  • Integrated suite of healthcare management tools
  • Logical integration with major labs


  • Doesn't offer a free tier or plan, only a free demo
  • Pricing can become high depending on the modules and features chosen
  • Interface might feel overwhelming to new users due to extensive features

9. Power Diary - Best for appointment management and scheduling

Interface of Power Diary's appointment setting system
Here is how Power Diary's appointment system is designed.

Power Diary is a practice management software that is tailored for healthcare practitioners. It primarily excels in appointment management and scheduling, offering an easy-to-use interface that makes it ideal for managing client sessions effectively.

Why I Picked Power Diary:

I selected Power Diary for its exceptional emphasis on appointment management and scheduling. The system’s ability to automate these processes while minimizing the possibility of double-booking stood out during my evaluation. Hence, my decision that Power Diary is the best for appointment management and scheduling.

Standout Features & Integrations:

One of Power Diary’s key features is its comprehensive appointment management system which includes automated reminders, waitlist management, and online booking. Another significant feature is its telehealth capability that allows secure video consultations. Power Diary also integrates well with popular applications such as Google Calendar, Xero, and Stripe for a holistic practice management experience.


Pricing for Power Diary starts from $26/user/month (billed annually). The cost can vary depending on the specific needs and scale of your practice.


  • Robust appointment management and scheduling system
  • Impeccable integration with other popular apps
  • Telehealth capability for online consultations


  • No permanent free tier, only a 14-day trial
  • Pricing might be steep for small practices
  • Interface might take time to familiarize due to the array of features

10. Valant - Best for a seamless blend of practice management and EHR

Screenshot for Valant substance abuse EMR software dashboard interface
Take a look into Valant's dashboard where action items, appointments of the day and important reminders can be easily viewed. On this tab, documentation status can also be checked.

Valant is a specialized EHR and practice management solution catering to the needs of behavioral health professionals. It stands out by combining electronic health records (EHR) and practice management in a manner that streamlines operations, aligning perfectly with its best-for status in blending these two critical areas.

Why I Picked Valant:

I selected Valant as it is purpose-built for behavioral health, providing a remarkable amalgamation of EHR and practice management tools. During my assessment, the degree of integration and the efficiency that results from it made Valant a distinctive option. This synergy led to my decision that Valant is best for a blend of practice management and EHR.

Standout Features & Integrations:

Valant offers a host of features, but its comprehensive EHR stands out with capabilities for patient portal, documentation, and e-Prescribing. The practice management tools also cover the entire gamut from billing to scheduling. Moreover, Valant can integrate with billing and telehealth solutions, adding to its overall utility.


Pricing information for Valant is not publicly disclosed and is available upon request.


  • Comprehensive integration of EHR and practice management tools
  • Designed specifically for behavioral health professionals
  • Allows for a range of integrations for added utility


  • Lack of a permanently free plan might deter small practices
  • Pricing information is not readily available
  • Some users may find the breadth of features overwhelming at first

11. BestNotes - Best for superior interoperability and coordination of care

Log in feature and profile information for BestNotes on desktop and mobile view
Here is a screenshot of BestNotes' interface on desktop and mobile view. The desktop view highlights the login page and on the mobile view, the profile information is highlighted.

BestNotes is a fully-integrated, EHR and CRM system designed primarily for mental and behavioral health providers. It excels at interoperability and coordination of care, which aligns with its standing as the best in this field.

Why I Picked BestNotes:

In the process of making my selection, I found BestNotes uniquely placed when it came to fostering collaboration between different health systems. This ability to interoperate and coordinate care is why I picked BestNotes. The tool's attention to facilitating effective coordination sets it apart from others, reinforcing its place as the best for interoperability and care coordination.

Standout Features & Integrations:

BestNotes offers robust features like patient portal, group notes, and e-Prescribing. Among its standout integrations, the system offers absolute integration with billing and laboratory services, which enhances its overall functionality.


BestNotes pricing starts from $50/user/month.


  • Robust interoperability capabilities.
  • Excellent for care coordination.
  • Comprehensive feature set with critical integrations.


  • Absence of a free tier or plan.
  • The starting price may be high for small practices.
  • Some users might need time to learn to navigate the comprehensive feature set.

12. PatientVu - Best for addiction-specific patient monitoring

main page interface for PatientVu substance abuse EMR software
Here is a screenshot of PatientVu's main page.

PatientVu is a robust EHR tool specifically designed for substance abuse and addiction treatment facilities. It focuses on comprehensive and continuous patient monitoring, making it the top choice for addiction-specific patient tracking.

Why I Picked PatientVu:

When comparing EHR tools, I selected PatientVu due to its specialization in addiction treatment. Its distinct feature that caught my attention is its excellent capability for addiction-specific patient monitoring. In my judgement, PatientVu emerges as the best choice for this specific use-case.

Standout Features & Integrations:

PatientVu provides essential features such as in-depth patient tracking, progress reports, and treatment planning. It integrates well with a range of systems, most notably insurance claim processing systems, which aid in streamlining administrative tasks.


Pricing information for PatientVu is not publicly available and is provided upon request.


  • Specialized in addiction treatment facilities.
  • Strong capabilities for patient monitoring.
  • Essential integrations with insurance claim systems.


  • No free plan or trial available.
  • Pricing information is not transparent.
  • Specialized nature may limit use for general practices.

Other Substance Abuse EMR Software Options

Below is a list of additional substance abuse software that I shortlisted, but did not make it to the top 12. Definitely worth checking them out.

  1. Kareo Clinical - Good for integrated billing and patient management
  2. MyClients Plus - Good for therapists seeking comprehensive note-taking features
  3. drChrono - Good for tailored EHR workflows in various healthcare specialties
  4. ICANotes - Good for behavioral health providers needing quick note generation
  5. Welligent - Good for cloud-based, mobile-enabled EHR services
  6. Kipu - Good for substance abuse and behavioral health treatment centers
  7. CollaborateMD - Good for practices requiring comprehensive claim management

Selection Criteria for Substance Abuse EMR Software

In my extensive experience evaluating EHR software, I've personally tested each of the tools on this list. For each, I looked not only at the basic functionality but also at the specific features that make them stand out in this specialized market. My goal was to find software that can effectively handle the unique challenges of the health care field.

Here’s what I evaluated:

Core Functionality

  • Ability to document medical histories and patient encounters
  • Options for prescription management and drug interaction checking
  • Tools for managing patient appointments and scheduling
  • Integrated billing functionality to manage financial aspects of patient care

Key Features

  • Interoperability: A top tool should support seamless data sharing with other healthcare systems and providers. This helps to provide comprehensive and coordinated care to patients.
  • Patient Portal: Patients should have the ability to access their medical records, schedule appointments, and message with their providers in a secure way.
  • Customizability: Every practice is different, so EHR software should be flexible enough to cater to the specific needs of each provider.
  • Compliance: Given the strict regulatory environment in healthcare, tools need to be compliant with all relevant standards, such as HIPAA in the US.


  • Intuitive Interface: For a software to be effective in a healthcare setting, it needs to have an interface that is easy to navigate even during a busy day at a practice. It should have clear, easy-to-find options for all common tasks.
  • Onboarding Process: The best tools will have a structured onboarding process to help get new users up to speed quickly. This is particularly important in healthcare, where downtime can impact patient care.
  • Customer Support: In the event of any issues, it is crucial that the software provider offers robust, responsive customer support.
  • Learning Resources: A comprehensive knowledge base, user manuals, and tutorial videos can make it easier for users to understand the full capabilities of the software and how to use it effectively.

People Also Ask (FAQs)

What are the benefits of using substance abuse EMR software?

Substance abuse EMR software provides several distinct benefits, including:

  1. Customizable Documentation: Substance abuse EMR software usually offers templates and forms specific to substance abuse treatment. This can greatly simplify the documentation process and ensure all necessary information is captured.
  2. Integrated Treatment Plans: These tools often offer features that aid in the creation and medication management of individualized treatment plans, which are crucial in substance abuse treatment.
  3. Data Security: Substance abuse EMR software is designed to be HIPAA-compliant, ensuring the sensitive information of patients is securely stored and transmitted.
  4. Interoperability: Many of these tools can integrate with other healthcare systems, allowing for a more coordinated and efficient approach to patient care.
  5. Enhanced Patient Engagement: With features such as a patient portal, patients can have more control over their care, improving their engagement and potentially leading to better outcomes.

How much does substance abuse EMR software cost?

The pricing for substance abuse EMR software varies greatly depending on the features offered, the size of the practice, and other factors. Some providers offer a monthly or yearly subscription model while others may have a one-time purchase cost with additional charges for support and updates.

What are the typical pricing models for these tools?

Most commonly, substance abuse EMR software providers offer a subscription-based model, where there is a reimbursement of a monthly or annual fee for access to the software. The fee usually includes customer support and updates. Some providers may also offer a per-patient pricing model, where the cost is based on the number of patients being managed using the software.

What is the typical range of pricing?

Pricing can range from around $50 per user per month for more basic software up to $500 per user per month or more for comprehensive systems with extensive features and high levels of customization.

What is the cheapest and most expensive software?

Valant starts at around $59 per user per month, making it one of the more affordable options. On the higher end, Welligent can cost up to $600 per user per month depending on the functionality required.

Are there any free tool options?

While most substance abuse EMR tools are paid due to the extensive functionality they provide, some may offer free trials or demo versions. However, it's important to keep in mind that these may have limited features or usage restrictions.

More Behavioral Health Software Reviews


Choosing the right substance abuse EMR software can significantly enhance the efficiency and effectiveness of your practice. Here are three main points to remember:

  1. Identify Your Needs: Before starting your search, clearly define your requirements. Do you need a system with robust reporting capabilities or a strong focus on patient engagement? Identifying these requirements upfront will help narrow down your options.
  2. Assess the User Experience: Not all EMR systems offer the same level of usability. Look for a system that is easy to navigate, provides intuitive features, and requires minimal training. Additionally, the system should have reliable customer support to resolve any issues promptly.
  3. Understand the Pricing Structure: Costs for substance abuse EMR software can vary widely based on a range of factors, including the features included, the size of your practice, and the pricing model. Make sure you fully understand the pricing structure of any system you are considering, including any additional fees for support, updates, or extra modules.

By focusing on these key areas, you'll be well on your way to selecting the best substance abuse EMR software for your practice.

What Do You Think?

We strive to provide the most comprehensive and accurate information on the best substance abuse EMR software options. However, there are many tools available and I might have missed some noteworthy options. If you use or know of a great tool that I didn't mention, please let us know. Your suggestions are invaluable in helping us improve our resources and assist more practices in finding the perfect EMR software.

By John Payne

John Payne is the co-founder and company director of Symphony Health. With over 20 years of management experience John is working alongside his wife, Dr. Kate Payne to build a multi-site Medical Practice where staff work collaboratively for the good of their patients. John is passionate about improving access to quality Healthcare in North Vancouver and sharing best practice with other people managing medical practices.